MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term HTR2A:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000102468	HTR2A	0	0	1	ENSG00000102468	ENST00000378688	ENSP00000367959	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled [Source:HGNC Symbol;Acc:5293]	13	47405685	47471169	-1	q14.2	47405685	47470173	HTR2A	HTR2A-001	HGNC Symbol	HGNC transcript name	3	39.27	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	KNOWN	3356	5293	HTR2A		27513

MSeqDR Master Exome Data Set M1: 116 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	13	47407584	C	A	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
2	13	47407584	C	A	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
3	13	47407584	C	A	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
4	13	47407783	G	A	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs139431449	0.0132	-	-	-	-	-	het	1
5	13	47407783	G	A	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs139431449	0.0132	-	-	-	-	-	het	1
6	13	47407783	G	A	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	rs139431449	0.0132	-	-	-	-	-	het	1
7	13	47407941	C	T	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs149887481	0.00815	-	-	-	-	-	het	11
8	13	47407941	C	T	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs149887481	0.00815	-	-	-	-	-	het	11
9	13	47407941	C	T	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	rs149887481	0.00815	-	-	-	-	-	het	11
10	13	47407942	G	A	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs143950250	0.014	-	-	-	-	-	het	1
11	13	47407942	G	A	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs143950250	0.014	-	-	-	-	-	het	1
12	13	47407942	G	A	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	rs143950250	0.014	-	-	-	-	-	het	1
13	13	47408177	A	G	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs75604221	0.0335	-	lod=15:259	-	-	-	het	2
14	13	47408177	A	G	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs75604221	0.0335	-	lod=15:259	-	-	-	het	2
15	13	47408177	A	G	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	rs75604221	0.0335	-	lod=15:259	-	-	-	het	2
16	13	47408226	G	A	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs77274377	0.0307	-	lod=20:289	-	-	-	het	2
17	13	47408226	G	A	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs77274377	0.0307	-	lod=20:289	-	-	-	het	2
18	13	47408226	G	A	ENST00000543956	ENSG00000102468	47405685	47471169	ENSP00000441861	HTR2A	-1	-	-	-	3'_UTR	rs77274377	0.0307	-	lod=20:289	-	-	-	het	2
19	13	47408350	T	C	ENST00000378688	ENSG00000102468	47405685	47471169	ENSP00000367959	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs17069218	0.0322	-	lod=13:243	-	-	-	het	3
20	13	47408350	T	C	ENST00000542664	ENSG00000102468	47405685	47471169	ENSP00000437737	HTR2A	-1	5HT2A_HUMAN	-	-	3'_UTR	rs17069218	0.0322	-	lod=13:243	-	-	-	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding HTR2A 13:47405685..47471169 region Gbrowse